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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatgaaacttcatttttctacagaaaagaatgagataagactgtaaagttttgttggtactttctatttgcagATTCGAATCAATGATGCGGAAGCAATCCGCCCTCTCTTCACAACCGGACTCATTGGGAGAGACAACTCAATAGCGAGGCACGGGATCCACGGGGTTTACA

Basic information

species Arabidopsis thaliana
transcript AT1G09910.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09910.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: LOC_Os08g44040.1 (Oryza sativa), 3'ss of exon 13
--------------------------------------gtaaagatgaaacttcatttttctacagaaaagaatgagataagactgtaaagttttgttggtac----tttctatttgcagATTCGAATCAATGATGCGGAAGCAATCCGCCCTCTCTTCACAACCGGACTCATTGGGAGAGACAACTCAATAGCGAGGCACGGGATCCACGGGGTTTACA
                                      |  ||  |  |     ||||   ||      |  || |   ||||   | |   |   |    |      || ||||| ||| ||||  ||||  ||  |||   ||     |||| ||||||||| ||| | ||||||| ||||||| | || ||||||||||||||||| | | | ||| 
gttatttcagaaaaaaaaacacaaaaatactcagattggccaatgtccattcctatttcattatttgttatcatcattcaagaagttgatactaaatacacaaaatgcttgtattttcagGTTCGTTTCAACAATCAGGACAGAACTGCTCCTCACTTCACAACTGGATTGATTGGGAAAGACAACACGATTGCGAGGCACGGGATCCATGCGCTGTACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116410203|gb|EG452795.1|EG452795
EST:     ATTACAAACTGCGAGTCGCCATAGCATCTGCAACCTTAGCCGAGTTGCAG                         ATTCGAATCAATGATGCGGAAGCAATCCGCCCTCTCTTCACAACCGGACTC
genomic: ATTACAAACTGCGAGTCGCCATAGCATCTGCAACCTTAGCCGAGTTGCAGgtaaagatga ... ctatttgcagATTCGAATCAATGATGCGGAAGCAATCCGCCCTCTCTTCACAACCGGACTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagaaaagaatgagataagactgtaaagttttgttggtactttctatttgcagATTCGAATCAATGATGCGGAAGCAATCCGCCCTCTCTTCACAACCGGACTCATTGGGAGAGACAACTCAATAGCGAGGCACGGGATCCACGGGGTTTACA
                                         ctttctattt  CT-rich tract
                         taaagtttt  TA-rich tract