Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgataatcttttataatttctagattataagacatctaatattctttcccctggattgtaacttgtaaatgacgatgcattatatttagagtgatttttcatgtcatctacagGATACTTTTGGTGGTAGACTGCAGGATAGGAACACAGAAATGCCTAAAGCAGTGAAACAAATCACTAGGCTATTTCCAAACAAAGTGACCATCCAATTAC

Basic information

species Arabidopsis thaliana
transcript AT1G02890.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059541|gb|DR355298.1|DR355298
EST:     TCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCG                         GATACTTTTGGTGGTAGACTGCAGGATAGGAACACAGAAATGCCTAAAGCA
genomic: TCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataat ... tcatctacagGATACTTTTGGTGGTAGACTGCAGGATAGGAACACAGAAATGCCTAAAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttgtaaatgacgatgcattatatttagagtgatttttcatgtcatctacagGATACTTTTGGTGGTAGACTGCAGGATAGGAACACAGAAATGCCTAAAGCAGTGAAACAAATCACTAGGCTATTTCCAAACAAAGTGACCATCCAATTAC
 ttgtaac  putative branch site (score: 2)
                    attatatttagagtga  TA-rich tract