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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttgctttacttgctttcgataaatcacctaattagtatgtgtgattgatctgacatgtgtgggcagATGGAGGAAAGGGAACAGAAGTTCTTGGCCTCGAATTCAACGAAGAGTTTCAAGGACGCAGCAATGGACCCAATACAAGACTACTTAGACACGGCCTTGA

Basic information

species Arabidopsis thaliana
transcript AT5G66310.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125194994|gb|EL209948.1|EL209948
EST:     GAACAGAGGAGACTGCTGCTCAAAAAGACAAGCAAATCATTCATCGATCG                         ATGGAGGAAAGGGAACAGAA
genomic: GAACAGAGGAGACTGCTGCTCAAAAAGACAAGCAAATCATTCATCGATCGgttagttttg ... gtgtgggcagATGGAGGAAAGGGAACAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttcgataaatcacctaattagtatgtgtgattgatctgacatgtgtgggcagATGGAGGAAAGGGAACAGAAGTTCTTGGCCTCGAATTCAACGAAGAGTTTCAAGGACGCAGCAATGGACCCAATACAAGACTACTTAGACACGGCCTTGA
                                    atctgac  putative branch site (score: 3)
                 taattagtat  TA-rich tract