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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaacggaatcaaatcttccgaaacaagaaaacaacatacatcaaaatgtaaatctgatgtttttaaatgtcttttgttgcagGTGAATCAAAAGATGATACTAATCCTAACGGCAAGTATAATGTATTGGAGCCTTCAACAACAATCATCATCGTCAGAGAGTTCAAGTTCGAGTTCAGACT

Basic information

species Arabidopsis thaliana
transcript AT5G55400.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55400.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA02G46580.1 (Glycine max), 3'ss of exon 13
--gtaaagaacggaatcaaatcttccgaaacaag-aaaacaacatacatcaaaatg----taaatctgatgtttttaaatgtcttttgtt------gcagGTGAATCAAAAGATGATACTAATCCTAACGGCAAGTATAATGTATTGGAGCCTTCAACAACAATCATCATCGTCAGAGAGTTCAAGTTCGAGTTCAGACT
   | | | |      |||   | || ||| |   ||    ||| |      | ||    |   | ||||||  || | | ||| ||| |      |||||| ||||| |||||||| || |  ||  | || |||||||||||||||||||| ||||||||  |   |    | ||    |    |||   |    || 
ccatcatgtaatagggcaatgataccaaaaaatttaagttgacacattctggattgagtttgtttatgatgtgattgattctctgttgatctcatggcagGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAAGACACGGATTCATTTCCTTCACCTGTCAACA

upper sequence: AT5G55400.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA14G02090.1 (Glycine max), 3'ss of exon 14
------gtaaagaacggaatcaaatcttccgaaacaagaaaaca-acatacatcaaaatgtaaatctgatgtttttaaatgtcttttgtt------gcagGTGAATCAAAAGATGATACTAATCCTAACGGCAAGTATAATGTATTGGAGCCTTCAACAACAATCATCATCGTCAGAGAGTTCAAGTTCGAGTTCAGACT
       |  | || || |   |  |     ||  |||   ||| |        | | | |   | ||||||  || | | | | ||| |      |||||| ||||| |||||||| || |  ||  | || |||||||||||||||||||| ||||||||  |          ||    |    |||   | | | | 
tttctcatgtaaaatggcaatgataccaaaaaattaagttgacacattctggatatagtttgtttatgatgtgattgattctttgttgatctcatggcagGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAGGACATGGATTCATTCCCTTCACCTGCCGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaacaacatacatcaaaatgtaaatctgatgtttttaaatgtcttttgttgcagGTGAATCAAAAGATGATACTAATCCTAACGGCAAGTATAATGTATTGGAGCCTTCAACAACAATCATCATCGTCAGAGAGTTCAAGTTCGAGTTCAGACT
                        atctgat  putative branch site (score: 4)
                                          tcttttgtt  putative PPT
                                tttttaaatgtctttt  TA-rich tract