Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccagATTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAA

Basic information

species Arabidopsis thaliana
transcript AT5G53430.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G170412_T01 (Zea mays), 3'ss of exon 13
gtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccagATTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAA
                ||  |||| |  |||   | ||||  || |||  |  | | ||  |||   |||   | |||       | | |     | |||||  || ||         |  |  ||| ||  | |  || |  | ||||| ||||| || || |||||||||||||| ||||| ||||| || | || ||||||||| || || |||||||| ||||| ||  | || || ||| |||
--------------gttgtttatctt--tcgtagtttcgtacta-taatttatgttgctcaagtggattga--ccaac-----aagtaatacatttctgtgctgaagtatggcagtctatgctctatgctcatct--atct-ctgcagATGTGTGTGATTTGTAAGCAAATACATGGTTCATGTACTCAATGCTACAGGTGCTCTACTTACTACCATGCCATTTGTGCATCAAGGGCAGGCTATCGAA

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 14
gtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccagATTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAA
                                   ||  || |    || ||    | |   ||| | | ||  |   || ||||     | |||||     || |   | || | | ||| ||   | |   ||  ||   || ||||||||||| || ||||||||||| ||||| || || || || ||||||||||| ||||| ||||  |||||||||||||||||  | ||||| ||| |||
-----------------------------------att-tggtgg-gagctttttgcattgggttgccttttgatg-tctcttgg-----tccactactcttaacaaatacaatctaaaaatctg--cattacttgaat---tttcagATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAA

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 14
gtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccagATTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAA
                                    ||    |  |  ||     || |||| |     |||||    ||||||     | |   |     | ||   | | |  |  |||   |    |  ||     |  || ||||||||||| || || |||||||| ||||| || || || || ||||||||||| ||||| ||||  |||||||||||||||||  | || || ||| |||
-----------------------------------ctccatttggtgggagc--ttcttgcattgg---gtttc----cttttgatgtctcttggtccactctaatgaatacaatctaaaagtctgcattacttg----aattttcagATTTGTGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAA

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 14
gtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccagATTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAA
                                  | |    ||  ||  || |  |     | | | ||| || |          |||  ||||     ||  |  || |             ||  | ||||||  ||  | | |||||||| ||||| || |||||||||||||| |||||||| |||||||||||||| ||||| || || ||||| |||||||| ||  | || |||||| | |
----------------------------------tttgaaaatgttagcatgatgtttaatattgagttggttttc-ttgcacatgaatcttcagctgatgtgat-ctgag-----------tttgccttgttttc-atgaaattcagATTTGCGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccagATTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAA
                                    tgtttttgatatatt  TA-rich tract