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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattccaatatcttaacaacatagaagtgtttggatgtggagttcaaacatgatatgacctgtcacttacttctttgcctctttagCTCACTGCATACCATGAGAGTGGTCATGCTATTGTCGCTTTAAATACGAAAGGTGCGCACCCGATCCACAAAGCGACTATAATGCCACGTGGATCTGCAT

Basic information

species Arabidopsis thaliana
transcript AT5G53170.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462972|gb|EG505564.1|EG505564
EST:     GAGGACTCAAAAAAG                         CTCACTGCATACCATGAGAGTGGTCATGCTATTGTCGCTTTAAATACGAAG
genomic: GAGGACTCAAAAAAGgtatattcca ... gcctctttagCTCACTGCATACCATGAGAGTGGTCATGCTATTGTCGCTTTAAATACGAAA
EST: gi|86036171|gb|DR331924.1|DR331924
EST:     CAGAGGACTCAAAAAAG                         CTCACTGCATACCATGAGAGTGGTCATGCTATTGTCGCTTTAAATACGAAA
genomic: CAGAGGACTCAAAAAAGgtatattcca ... gcctctttagCTCACTGCATACCATGAGAGTGGTCATGCTATTGTCGCTTTAAATACGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatgtggagttcaaacatgatatgacctgtcacttacttctttgcctctttagCTCACTGCATACCATGAGAGTGGTCATGCTATTGTCGCTTTAAATACGAAAGGTGCGCACCCGATCCACAAAGCGACTATAATGCCACGTGGATCTGCAT
                                cacttac  putative branch site (score: 2)
                               tcacttacttctttgc  CT-rich tract
                  atgatat  TA-rich tract