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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattaatctctttacttgtgatttttttgtcatttatactctattaaaatttaatcttaactatttgatctcatgtctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAG

Basic information

species Arabidopsis thaliana
transcript AT5G50950.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080103|gb|DR375860.1|DR375860
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|116428257|gb|EG470849.1|EG470849
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|124769634|gb|EH859764.1|EH859764
EST:     CTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: CTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|86075192|gb|DR370949.1|DR370949
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATRGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|125272629|gb|EL286714.1|EL286714
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAG
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAG
EST: gi|116456305|gb|EG498897.1|EG498897
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttatactctattaaaatttaatcttaactatttgatctcatgtctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAG
                                             tctttact  CT-rich tract
     atactctattaaaatt  TA-rich tract