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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatagtttttactgctgtatcgaagattttcgattgtttttagtattatgaatctcagatctttctatgtttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCACTGGTTAGCGATATACCGACAATCATTTTTGGCGCAGACGTGACTCACC

Basic information

species Arabidopsis thaliana
transcript AT5G43810.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43810.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 13
------------------gtgaatagtttttactgctgtatcgaagattttcgattgtttttagta-ttatgaatctcagatctttctatgtttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCACTGGTTAGCGATATACCGACAATCATTTTTGGCGCAGACGTGACTCACC
                   || ||| || |      | | | ||    ||| || || ||  |  |  ||   |      || |  |    | |   | ||||||||||| || ||||| ||||| || || ||  ||||||||||||||||| ||||||| || ||||| || || || ||||| ||||| || || || |
tgtagtcatccctgctctatggata-ttgtcggaattat-ttgacttctttggaatgcttccaacaactaaataatgatcatttgacctcttcttaatgcagATGGGAGGTAGAAACACCGTTCTTGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATC

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 5
--------------gtgaatagtttttactgctgt-atcgaagattttcgat-tgtttttagta--ttatgaatctcagatctttctatgtttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCACTGGTTAGCGATATACCGACAATCATTTTTGGCGCAGACGTGACTCACC
               |  || | | ||  ||   | ||   |  | || | | |||||  |  |  | || |||      |    || |  ||| |  ||||||||||| || ||||| ||||| || || ||  ||||||||||||||||| ||||||| || ||||| || || || ||||| || || || || || |
tgtagtcatctctgctctatggatattgttggaattatttgacttctttggtatgtttccaacaactaattaatgatgatttgacctcttcttgatg-cagATGGGAGGTAGAAACACCGTTCTGGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCGGATGTTACCCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828868|gb|CK118552.1|CK118552
EST:     AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAG                         ATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCA
genomic: AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgtgaatagtt ... ttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCA
EST: gi|86072813|gb|DR368570.1|DR368570
EST:     AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAG                         ATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATTCCA
genomic: AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgtgaatagtt ... ttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcgattgtttttagtattatgaatctcagatctttctatgtttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCACTGGTTAGCGATATACCGACAATCATTTTTGGCGCAGACGTGACTCACC
       attgtttttagtatta  TA-rich tract