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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttatatatgtgaaaactctatagttggttttggttgcagaatgattgataaaaatgttttcagGTGAAGGAAGATGTGAAGCTCGAACAGATAAGATCATCTGTAAACCTGTCATTCCATTCGTTTACAGAGAAAGTTCCTGACTCAAAGTCAACTTCTGAAA

Basic information

species Arabidopsis thaliana
transcript AT5G35910.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163971468|gb|ES039034.1|ES039034
EST:     CTTTGCTGGGAAATGCAGCCTCCAAGAAGAAATCTCGAACTGATGAGAAG                         GTGAAGGAAGATGTGAAGCTCGAACAGATAAGNTCATC
genomic: CTTTGCTGGGAAATGCAGCCTCCAAGAAGAAATCTCGAACTGATGAGAAGgtgagtttat ... atgttttcagGTGAAGGAAGATGTGAAGCTCGAACAGATAAGATCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaaactctatagttggttttggttgcagaatgattgataaaaatgttttcagGTGAAGGAAGATGTGAAGCTCGAACAGATAAGATCATCTGTAAACCTGTCATTCCATTCGTTTACAGAGAAAGTTCCTGACTCAAAGTCAACTTCTGAAA
                                  gattgat  putative branch site (score: 4)
                                              tgttttc  putative PPT
                               aatgattgataaaaat  TA-rich tract