Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatctctggatgatcaaatgagttacataatatttcttaattgaattggacatttggttaatagattctcttgaaccttgttttcagGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAGAACGCCACCACGAGCATGTTATCTGATGACAACACCCCAAAATCCATAC

Basic information

species Arabidopsis thaliana
transcript AT5G27150.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125193220|gb|EL208174.1|EL208174
EST:     ATGCGATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACC
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACC
EST: gi|124906084|gb|EH980164.1|EH980164
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTT-AGCACAGTG                         GTGTTTGGTATG
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATG
EST: gi|124813141|gb|EH898007.1|EH898007
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCA
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCA
EST: gi|124847387|gb|EH931824.1|EH931824
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTG-TATG
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATG
EST: gi|125275170|gb|EL289255.1|EL289255
EST:     ATGCAANCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCA
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCA
EST: gi|125180168|gb|EL197351.1|EL197351
EST:     TGCAATCAATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCA
genomic: TGCAATC-ATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCA
EST: gi|116439011|gb|EG481603.1|EG481603
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAG
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAG
EST: gi|164049622|gb|ES115403.1|ES115403
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTG-CTTTTTAGCACAGTG                         GTGTTTGGTATGC
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGC
EST: gi|125104572|gb|EL158612.1|EL158612
EST:     TGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGTCACAGTG                         GTGTTTGGTATG
genomic: TGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAG-CACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATG
EST: gi|124782870|gb|EH872795.1|EH872795
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCACT
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCACT
EST: gi|125326163|gb|EL340243.1|EL340243
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATG
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATG
EST: gi|116429610|gb|EG472202.1|EG472202
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAG
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAG
EST: gi|124910090|gb|EH984170.1|EH984170
EST:     ATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAG
genomic: ATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAG
EST: gi|164022046|gb|ES088497.1|ES088497
EST:     ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTG                         GTGTTTGGTATGC
genomic: ATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGgtaagaaatc ... ttgttttcagGTGTTTGGTATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttaattgaattggacatttggttaatagattctcttgaaccttgttttcagGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAGAACGCCACCACGAGCATGTTATCTGATGACAACACCCCAAAATCCATAC
                                           ccttgttttc  CT-rich tract
     taattgaatt  TA-rich tract