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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttttccttaggattatttactcgaactttagttattaagatgccttatactgaagatgctgacggatctttttcagGTCAAATTTGATCAATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCAT

Basic information

species Arabidopsis thaliana
transcript AT5G22750.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G057504_T01 (Zea mays), 3'ss of exon 2
gtattgttttccttaggattatt-tactcgaactttagttattaagatgccttatactgaagatgctgacggatctttttcagGTCAAATTTGATCAATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCAT
||| ||   | ||   ||| |   || ||    || ||  |   | ||   ||    ||    || |||        ||  |||| |||||||||||||||||||| ||||| |  ||||| || ||||||||||| ||  ||||  | |||||||| ||  | ||||| |||||||| ||||
gtaatgcgcttctactgataagcgtattc---tttcagggaaacaaattaattgccttg----tgttga--------ttatagGTAAAATTTGATCAATTTGTTGAGCAAGGAAGGGTTCTGCACAACTATGCTTCAATTTTGGAGTTACTTTTGCGCCTAAGGCAATGCTGTGATCATCCAT

upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA17G05390.1 (Glycine max), 3'ss of exon 13
-------------------gtattgttttccttaggattatttactcgaactttagttattaagatgccttatactga----agatgctgacggatctttttcagGTCAAATTTGATCAATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCAT
                     | | |  |  ||    || || ||   |  ||| |  | | | |      | | |||    |   | ||| | |  || | ||||| |||||||| || |||||||| |||||    ||||||||||| |||||||| ||  ||||  | ||||| |||||||| |||||||||||||| ||||
gtattctgagtttctaatctaaatttaatattttcagtttttcaccttattttttggcactgaaacaaaccacattgatccaactcgttgatgaaatttatgcagGTAAAATTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCAT

upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA12G30540.1 (Glycine max), 3'ss of exon 14
-------------------gtattgttttccttaggattatttactcgaactttagttattaagatgccttatactga----agatgctgacggatctttttcagGTCAAATTTGATCAATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCAT
                     | | |  |  ||    || || ||   |  ||| |  | | | |    | | | |||    |     ||| | |  || | ||||| |||||||| || |||||||| |||||    ||||||||||| |||||||| ||  ||||  | ||||| |||||||| |||||||||||||| ||||
gtattctgagtttctaatctaaatttaatattttcagtttttcaccttattttttggcaatgaaacaagtcacattgatccaactcattgatgaaatttatgcagGTAAAATTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCAT

upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 13
gtattgttttccttag--gattat-ttactcgaactttagttatt-----aagatgccttatactgaagatgctgacggatctttttcagGTCAAATTTGATCAATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCAT
|||||   |  ||||   |||| | ||    | | |||  | |||     | ||  |||| |  | ||  || |     |  || ||||||| || ||||||||||||||||| |||||    ||||||||||| |||||||| ||  ||||  |||||||  ||||||| |||||||||||||| ||||
gtattccctgacttaaatgattgtattgactgcatttttctgattttagtatgacaccttttctttaatttgattg-aaacattcttcagGTGAAGTTTGATCAATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCAT

upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: EFJ15495 (Selaginella moellendorffii), 3'ss of exon 2
gtattgttttccttaggattatttactcgaactttagttattaagatgccttatactgaagatgctgacggatctttttcagGTCAAATTTGATCAATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCAT
              ||||  |   |||| | || |  || ||    |||   | ||         |    |||      ||||| ||||| ||||| |||||| || |||| |||||||||||||||||||| || || || ||||| ||  | ||  | || |||  ||||||||| || |
------------gcaggaagaaaaactc-atctatttttctttcattgctgaacacctttttctttatgtgat------cagGTAAAATTCGATCAGTTTGTTCAAGAAGGTAAAGTTCTTCATAACTATGCGTCAATACTCGAACTCCTACTTCGATTACGGCAAGCTTGTGATCATCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaactttagttattaagatgccttatactgaagatgctgacggatctttttcagGTCAAATTTGATCAATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCAT
                                   tgctgac  putative branch site (score: 2)
                                             tctttttc  putative PPT
     tttagttattaagat  TA-rich tract