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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaaattttgattgtagttactaattagattttgtgctgaataacattttttgtccatatattttgtgttgattctttcctcttttcttatcttctgttggtagGCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATG

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 13
gtgagttaaattttgattgtagttactaattagattttgtgctgaataacattttttgtccatatattttgtgttgatt--ctttcctcttttcttatcttctgttggtagGCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATG
||||||||  |||| ||| ||   |  ||| |||||   || |        ||| |||||   ||||| | | |  | |   ||    |  | |||| || ||||    |||| |||||||| || ||||||||||| ||||| |||||||| ||||| ||||| | ||| ||||||||||||||||| |||
gtgagttatttttt-attata---aagaataagattagctgttt-------tttcttgtc---atattctatataaactaaattgtggcggtgcttacctactgt----agGCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGGTACTTTATATTGTTACGTCGGTATACTTTTCTGGAGTCATG

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 13
gtgagttaaattttgattgtagttactaattagattttgtgctgaataacattttttgtccatatattttgtgttgattctttcct--cttttcttatcttctgttggtagGCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATG
||||||||  |||| ||| ||   | |||   |||| | || |  ||        |||||   ||||| |   |  | |   || |  |  | |||| || ||||    |||| |||||||| || ||||||||||| ||||| |||||| | ||||| ||||| | ||| ||||||||||||||||| |||
gtgagttat-ttttaattataaagattaa---gattatttgttttat-------cttgtc---atattctacataaactaaatcgtggcagtgcttacctactgt----agGCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGATACTTTATATTGTTACGTCAGTATACTTTTCTGGAGTCATG

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 13
gtgagttaaattttgattgtagttactaattagattttgtgctgaataacattttttgtccatatattttgtgttgattctttcctcttttcttatcttctgttggtagGCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATG
|||||||  || |  ||     ||  ||  |  || |||   | | |  | |  ||| | | ||       | |  || |||   |    | |  ||||   |||| |||| ||||||| ||| ||||||||||| ||||| ||||| || |||||||| || |  |||||||| ||||||||||| |||
gtgagtttgatct--atc----tttttacctcaatattgcttttagtttcctacttttttcttaa---ccatatccatccttgtatgacat-tggtctttatttggcagGCATGCTTTTTGCCACTATCTGATGCAAGCTCCTTTGTTGTTCTTTACATAGTGACATCTGTATATTTTTCTGGAGTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtccatatattttgtgttgattctttcctcttttcttatcttctgttggtagGCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATG
                 tgttgat  putative branch site (score: 4)
            ttttgtgttgattctt  CT-rich tract
       atatattttgtgtt  TA-rich tract