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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcattcttctgaattctacttaaataatatccgcttaaatctcatattgcctatgattttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATCATAAACAACCCTTTGCTCTGGGAACGGTTAGGCAGCGATGCTTATGGAA

Basic information

species Arabidopsis thaliana
transcript AT5G18230.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164030746|gb|ES157039.1|ES157039
EST:     CCCTATTCTCCG                         AGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
genomic: CCCTATTCTCCGgtacatcatt ... ttttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
EST: gi|116424314|gb|EG466906.1|EG466906
EST:     ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCG                         AGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
genomic: ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCGgtacatcatt ... ttttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
EST: gi|116407887|gb|EG450479.1|EG450479
EST:     ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCG                         AGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
genomic: ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCGgtacatcatt ... ttttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctacttaaataatatccgcttaaatctcatattgcctatgattttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATCATAAACAACCCTTTGCTCTGGGAACGGTTAGGCAGCGATGCTTATGGAA
     tacttaaataatat  TA-rich tract