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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagcttctgtgtagatctcaccatttcagaggctttttagccttttggttgattatggtttaaaaccgtctggctttatagaaaattaagatttgtatcctttatttctttcacataatagGATGATATTGTTCAAAGTTGCTATTGGGATTCTGCCCGTCCTTTTGATTTAAGACGAGATTCCGATGCCATTCCTTCTGATGTGACTCTTCAATCCATTA

Basic information

species Arabidopsis thaliana
transcript AT5G15680.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G15680.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA11G06550.1 (Glycine max), 3'ss of exon 12
----------------------------------------------gtaagtagcttctgtgt-agatctcaccatttcagaggctt--tttagccttttggt--tgattatggtttaaaaccgtctggctttatagaaaattaagattt-gtatcctt-----tat---ttctttcacataatagGATGATATTGTTCAAAGTTGCTATTGGGATTCTGCCCGTCCTTTTGATTTAAGACGAGATTCCGATGCCATTCCTTCTGATGTGACTCTTCAATCCATTA
                                               | | |  | || |  | | || | | | | | |  || |    | |    |||  |  |  ||||  ||| |    |  |    | ||   | |||||| ||| ||  ||||     |||   | | ||  ||| ||||||||| |||||||| |  ||||||||||| || |  || || |||||||| | ||||||  | |||||||||||| |||| ||||| |||||||| || |
gtatgcatttgcctttattatttttatttttatttttattttaaggctcaatttcgtcagaatgatattttatcttgttatgggatacactcatttattttatcatatttattcttttattttgggttcaatcatgtcatattaagcttttgtccccttaaagatataaataccttggcattatagGATGAGATTGTTCAGAACTGCTATTGGGACTCAGGGCGACCATTTGATTTGAAACGAGAACCTGATGCCATTCCTCCTGAAGTGACACTTCAATCTATAA

upper sequence: AT5G15680.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 12
gtaagt---agcttctgtgtagatctcaccatttcagaggctttttagccttttggttgattatggtttaaaaccgtctggctttatagaaaattaagatttgtatcctttatttctttcacataatagGATGATATTGTTCAAAGTTGCTATTGGGATTCTGCCCGTCCTTTTGATTTAAGACGAGATTCCGATGCCATTCCTTCTGATGTGACTCTTCAATCCATTA
|| |||    |  | |   || || |   | |  |  |   |||| |  | ||    |    ||   | ||||  ||      || ||    |||     ||  |   |  |   |||| |  | | |||||||||||||||| |||||||||||||||||||  ||||| |||||| | ||||| || || ||||| || ||| ||||||  ||  ||||||| ||| 
gtgagttgtggtatattactaaatgttttcctgaccaaactttttcattccttcaagtttcaatttgtgaaaaatgtgaatgctttta----attgtttcttaaactatgaa---ctttgagtttacagGATGATATTGTTCAGAGTTGCTATTGGGATTCTGGGCGTCCATTTGATATGAGACGGGAATCTGATGCTATCCCTCCTGATGCAACATTTCAATCTATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctggctttatagaaaattaagatttgtatcctttatttctttcacataatagGATGATATTGTTCAAAGTTGCTATTGGGATTCTGCCCGTCCTTTTGATTTAAGACGAGATTCCGATGCCATTCCTTCTGATGTGACTCTTCAATCCATTA
                         tttgtatcctttattt  CT-rich tract
        tttatagaaaattaag  TA-rich tract