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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataaattccgttcaaaattgcctctcggtgtattgaaactgcctgtttttctaacttggtttcatttcttatcttaattattctcctggtagCTGTCTTGGGGCGGCTTCCAGGCACCACTGTGTACAGAAACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCGAATCGATTC

Basic information

species Arabidopsis thaliana
transcript AT5G13550.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 13
gtaagataaattccgttcaaaat---tgcctctcggtgtattgaaactgcctgtttttctaacttggtttcatttcttatcttaattattc-tcctggtagCTGTCTTGGGGCGGCTTCCAGGCACCACTGTGTACAGAAACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCGAATCGATTC
 |    |   ||    | | |||   || ||  | || |  | |   || |  ||  | |  | |   |    || || |   |  | ||| |      |||| |||||||||| ||||||||||||||||| || ||||||||  |||| |||||||| || || |||||| | ||||||||||| ||||| || ||| |
-tggagtttctttatgtaataatatatggcttactgtttcattattttggcatttgatttctcctcactctgattgttctgcaatctgttcattactccagCTTTCTTGGGGCGTCTTCCAGGCACCACTGTTTATAGAAACATTCAGCAATATCCAGAAGCATATACATACCATGGGATTGTGATTGTTCGGATTGATGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgcctgtttttctaacttggtttcatttcttatcttaattattctcctggtagCTGTCTTGGGGCGGCTTCCAGGCACCACTGTGTACAGAAACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCGAATCGATTC
                                        ttattctcct  CT-rich tract
                      tttcatttcttatctt  TA-rich tract