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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttccactctaaacatctcaaataataatgatattattttgcatttggaagtccctcactctacatttcataacatgctatatatgatcatacaaaaaaatgttccatagGTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAA

Basic information

species Arabidopsis thaliana
transcript AT5G03730.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414933|gb|EG457525.1|EG457525
EST:     GGGAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAG                         GTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT
genomic: GGGAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAGgtactttcca ... tgttccatagGTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT
EST: gi|124983048|gb|EL055806.1|EL055806
EST:     GAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAG                         GTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT
genomic: GAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAGgtactttcca ... tgttccatagGTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT
EST: gi|116423837|gb|EG466429.1|EG466429
EST:     GGGAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAG                         GTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT
genomic: GGGAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAGgtactttcca ... tgttccatagGTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT
EST: gi|116414934|gb|EG457526.1|EG457526
EST:     GGGAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAG                         GTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT
genomic: GGGAGCTTGCTACATTGCAACAACCATGGGGTAACTTAAATCCGGCTCAGgtactttcca ... tgttccatagGTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactctacatttcataacatgctatatatgatcatacaaaaaaatgttccatagGTTGTAGCTGCGGTTGGTTTCAAGTGTAAACGGCTGGAGATCCCGCGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAA
            tcataac  putative branch site (score: 2)
                       tatatatgatcataca  TA-rich tract