Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatactccatattgttacttgatcagttttattgatagggttccttttctaacaagcaaccatgatttttgcagGGACCACTGTGAAGTATGTCTTGGAGCAAGATAAGGCAGCCTTTGTTCGTTTGATTGGTTTGAGTGTTCTCCAAAGTGGTGCATCTTCTATAATTGCTCC

Basic information

species Arabidopsis thaliana
transcript AT4G39850.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39850.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G060045_T01 (Zea mays), 3'ss of exon 12
------gtaaacatactccatattgttacttgatcagttttattgatagggttccttttctaacaagcaaccatgatttttgcagGGACCACTGTGAAGTATGTCTTGGAGCAAGATAAGGCAGCCTTTGTTCGTTTGATTGGTTTGAGTGTTCTCCAAAGTGGTGCATCTTCTATAATTGCTCC
       |    |  |||  |  | || | |  | ||      ||  || ||   | |  ||  |  |  | |  || ||   |||||| |||||||||| ||||||||| || || || |  |||||| |||| ||||||||| | ||| |||| ||||||||||||  |||| |  | || ||
gttgttcttttaaccctctgttatcttccgttgttagaaaagctgcaagtgtagttctcatatgatacttcaa--atcttactagGGACAACTGTGAAGTTTGTCTTGGAACAGGACAAAGATGCCTTTATTCGCTTGATTGGTGTCAGTATTCTACAAAGTGGTGCAAATTCTTTTGTGGCACC

upper sequence: AT4G39850.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 14
gtaaacatactccatattgttacttgatcagttttattgatagggttccttttctaacaagcaaccatgatttttgcagGGACCACTGTGAAGTATGTCTTGGAGCAAGATAAGGCAGCCTTTGTTCGTTTGATTGGTTTGAGTGTTCTCCAAAGTGGTGCATCTTCTATAATTGCTCC
      ||  ||     | ||   |  |||  ||||||  |  |  ||| |     |  |  |   ||| | |   |||| ||||||||||||| ||| |||||||| ||||| ||  ||||| |||| || |||||||| |||||||| ||||||| |||||||||| | ||||||||
----gtattttctcatcttttgactattca--tttattc-tgtgaatccatgatagatgaaaatttatgctct---cagGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGTTGCATCTTCTTTCATTGCTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcagttttattgatagggttccttttctaacaagcaaccatgatttttgcagGGACCACTGTGAAGTATGTCTTGGAGCAAGATAAGGCAGCCTTTGTTCGTTTGATTGGTTTGAGTGTTCTCCAAAGTGGTGCATCTTCTATAATTGCTCC
                           ttctaac  putative branch site (score: 1)
                                              tttttgc  putative PPT
       ttttattgata  TA-rich tract