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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgtattttgtattcatctctttcctcattctttgaggctcagagaattaatatttctttagatgtatctgtgtccatcatgatgcagtcagatatgaaagtgtttgtttgtcttttttgctgttttgtaaagGCCTATGCAAACGAAGGTTTGAGAAAGCTTGCGCTGGTGGTGAACCTGTTGTGTCCTTCAAATCAGGGCGCCCTCAAATTGAAAATAAATG

Basic information

species Arabidopsis thaliana
transcript AT4G34830.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478999|gb|EG521591.1|EG521591
EST:     AAAAGGAGATGGAGTATCACCAAACTTGATCATGTGCAGATGCATAACCA                         GCCTATGCAAACGAAGGTTTGAGAAAGCTTGCGCTGGTGGTGAACCTGTTG
genomic: AAAAGGAGATGGAGTATCACCAAACTTGATCATGTGCAGATGCATAACCAgtaagcttgt ... ttttgtaaagGCCTATGCAAACGAAGGTTTGAGAAAGCTTGCGCTGGTGGTGAACCTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgatgcagtcagatatgaaagtgtttgtttgtcttttttgctgttttgtaaagGCCTATGCAAACGAAGGTTTGAGAAAGCTTGCGCTGGTGGTGAACCTGTTGTGTCCTTCAAATCAGGGCGCCCTCAAATTGAAAATAAATG
                                 tcttttttgctgtttt  CT-rich tract
                                             ttttgtaaa  TA-rich tract