1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacatacatactctgactcttcttaattagtgttcactgaatggttcttgactctaaattgattttggtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACATACATTTCATCAAGCAAACAATGGATATCCTTCTGCAAACCCAAATGCT
species | Arabidopsis thaliana |
transcript | AT4G32630.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG GCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACAEST: gi|116405912|gb|EG448504.1|EG448504
genomic: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacat ... gtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
EST: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG GCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACAEST: gi|116405910|gb|EG448502.1|EG448502
genomic: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacat ... gtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
EST: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG GCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
genomic: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacat ... gtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
ttaattagtgttcactgaatggttcttgactctaaattgattttggtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACATACATTTCATCAAGCAAACAATGGATATCCTTCTGCAAACCCAAATGCT
tctaaattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatacatactctgactcttcttaattagtgttcactgaatggttcttgactctaaattgattttggtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACATACATTTCATCAAGCAAACAATGGATATCCTTCTGCAAACCCAAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA