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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatcctctttagtacattgtttcagctgattctttacatctaaaagtttcatgaatatggaactaaaattggtgatccaaaagaattattcttgatttcacaactcgaaagtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCGGCGGTACAGCCGCAGCCCTATCCGTAGCCGATCTCCACCTTACAGAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G32420.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443354|gb|EG485946.1|EG485946
EST:     TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG                         GTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG
EST: gi|116447362|gb|EG489954.1|EG489954
EST:     TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG                         GTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTTTCTGTTATCGCAACCG
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG
EST: gi|124997114|gb|EL069383.1|EL069383
EST:     TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG                         GTATAGAAGAAGAAGCCG
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCG
EST: gi|116409463|gb|EG452055.1|EG452055
EST:     TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG                         GTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTTTCTGTTATCGCAACCG
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattggtgatccaaaagaattattcttgatttcacaactcgaaagtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCGGCGGTACAGCCGCAGCCCTATCCGTAGCCGATCTCCACCTTACAGAAAG
             aaaagaattattctt  TA-rich tract