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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttaatattaacttattgtctttaattttggacctttccataactgtctgcgaccaaagctaaattgcatgaaatcttcttcgttttgatggatttcagATATGTGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAA

Basic information

species Arabidopsis thaliana
transcript AT4G27910.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 14
gtaaatttaatattaacttattgtctttaattttggacctttccataact----gtctgcgaccaaagctaaattgcatgaaatcttcttcgttttgatggatttcagATATGTGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAA
    ||||  |   | ||| |||  ||   ||     |||||  ||  ||    |||  | ||       ||||   ||  ||   ||| | ||        |||||||| ||||| || ||||| ||||| ||||| |||||||| || ||||||||||||||||| || |  |||||||||||||| ||  | ||||||||| |||
----atttggtgggagctttttgcattgggtt----gccttttgatgtctcttggtccactactcttaacaaatacaatctaaaaatctgcattacttgaattttcagATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAA

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 14
gtaaatttaatattaacttattgtctttaattttggacctttccataactgtctgcgaccaaagctaaattgcatgaaatcttcttcgttttgatggatttcagATATGTGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAA
 |  ||||  |   | ||| |||  ||   |||    |||||  ||  || |  |    |     | |||   ||  ||   ||| | ||        |||||||| ||||| || || || ||||| ||||| |||||||| || ||||||||||||||||| || |  |||||||||||||| ||  | || |||||| |||
ctccatttggtgggagcttcttgcattgggttt----ccttttgatgtctcttggtccactctaatgaatacaatctaaaagtctgcattacttgaattttcagATTTGTGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAA

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 14
-gtaaatttaatattaacttattgtctttaattttggacctttccataactgtctgcgaccaaagctaaattgcatgaaatcttcttcgttttgatggatttcagATATGTGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAA
  | ||   ||| ||| | |  ||  |||||| |||      |           ||   |   |||| |  ||     | | | | | ||||| ||| | ||||||| || ||||| || || ||||||||||| || || || |||||||||||||||||||| ||||| ||||| |||||||| ||  | || || ||| | |
tttgaa---aatgttagcatgatg--tttaatattgagttggttttcttgcacatgaatcttcagctgatgtgatctgagtttgccttgttttcatgaaattcagATTTGCGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctgcgaccaaagctaaattgcatgaaatcttcttcgttttgatggatttcagATATGTGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAA
                taaatt  TA-rich tract