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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttagaatgttgcctatatttttgaattgctcattcgaaactgggttagcttgaaagtcacaattcacacgaactcaaataagtcctcactgttttgtggcttttgatctctatcatctgagttgtgctcttgaaatgtacctttgtcatctacctaactgatgtgaatttgcctatgtagGTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACT

Basic information

species Arabidopsis thaliana
transcript AT4G27650.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27650.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 3'ss of exon 12
gtgatttagaatgttgcctatatttttgaattgctcattcgaaactgggttagcttgaaagtcacaattcacacgaactcaaataagtcctcactgttttgtggcttttgatctctatcatctgagttgtgctcttgaaatgtacctttgtcatctacctaactgatgtgaatttgcc----tatgtagGTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACT
                          |    |||  || |    || ||||| | |     ||    |      ||  |    |   | |  |    ||  || || || |   || |    | ||  | |||||     |  | ||||| | |  |  ||||  || |   | | ||    | |||||||| |||||||||| ||||||  |||||||||||||| |
-------------------------gtaggatgcaaatcctt--cttggttaacatcttcatctgtctctttctgattttgtttctcttcctaactcttgttgtctgttcaaacctgtttgttaagc-gagctct----gtccatctttgcc-ttgaaataacaaatatctttctccccctttttgtagGTCCAAGCTCTCAAAGATTTTTTCAACATGCTTTCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124882265|gb|EH961167.1|EH961167
EST:     ATGCCCCCAACGTGATGAATATGATAAAAGATACAAAAGCAGCAAAAGAG                         GTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACTGAA
genomic: ATGCCCCCAACGTGATGAATATGATAAAAGATACAAAAGCAGCAAAAGAGgtgatttaga ... gcctatgtagGTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcttgaaatgtacctttgtcatctacctaactgatgtgaatttgcctatgtagGTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACT
                                          tttgcct  CT-rich tract
       aaatgta  TA-rich tract