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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtagttgcccgtctaatttatccgagttgtttttcatgctagtatctaaaaacggaaggatcattttatccccattttccgcgtttttgtagGTGAAGACAGGAAAGAGTAGTTTAGAACAGATATCCAGAGTTTATGGAAATCAG

Basic information

species Arabidopsis thaliana
transcript AT4G26900.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26900.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 12
gtaagtttgtagttgcccgtctaatttatccgagttgtttttcatgctagtatctaaaaacggaaggatcattttatccccattttccgcgtttttgtagGTGAAGACAGGAAAGAGTAGTTTAGAACAGATATCCAGAGTTTATGGAAATCAG
              |   |    ||||     |  | ||| |   |||  | ||    | |       | |||  ||  || |   | || |||||  |||||||||| |||||||  || ||||||||||| || |||||||||||||| |||
--------------gtatgcagtattttcattatctatttcttcagctgatctc----atcttttcttttattacatgtcc-tgaactgccttttt-cagGTGAAGACCGGAAAGACCAGCTTAGAACAGATTTCAAGAGTTTATGGAAACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctagtatctaaaaacggaaggatcattttatccccattttccgcgtttttgtagGTGAAGACAGGAAAGAGTAGTTTAGAACAGATATCCAGAGTTTATGGAAATCAG
      atctaaa  putative branch site (score: 3)
                                     ttttccgcgttttt  putative PPT
     tatctaaaaa  TA-rich tract