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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctttcttcttcttttcccttcttctatgaatcaaaagatagaaactttgggaggctgatgaagtaagtccctttgttattgtgtgtgtgtagTTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGACTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTCCTTTCCCGCGCACACCTGC

Basic information

species Arabidopsis thaliana
transcript AT4G17300.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458638|gb|EG501230.1|EG501230
EST:     CAACAAAGAGAGCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAG                         TTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGACTGGTCCAATTTGTCA
genomic: CAACAAAGAGAGCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAGgtctctttct ... gtgtgtgtagTTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGACTGGTCCAATTTGTCA
EST: gi|124795661|gb|EH885340.1|EH885340
EST:     ACAAAGAGAGCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAG                         TTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGACTGGTCCAATTTGTCA
genomic: ACAAAGAGAGCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAGgtctctttct ... gtgtgtgtagTTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGACTGGTCCAATTTGTCA
EST: gi|125273777|gb|EL287862.1|EL287862
EST:     CAACAAAGAGAGCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAG                         TTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGA
genomic: CAACAAAGAGAGCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAGgtctctttct ... gtgtgtgtagTTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagaaactttgggaggctgatgaagtaagtccctttgttattgtgtgtgtgtagTTCCTCATGCAGGATTTGGACTAGGGTTTGAGAGACTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTCCTTTCCCGCGCACACCTGC
               ggctgat  putative branch site (score: 4)
                                  tttgttatt  TA-rich tract