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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattccttataaaaaaagactcacctcctccctttaccttgcctgtttccttgcataacaatcctctgttttttttgtttgtagCTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G11720.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116455584|gb|EG498176.1|EG498176
EST:     TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAG                         CTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT
genomic: TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGgtgattcctt ... ttgtttgtagCTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT
EST: gi|116455581|gb|EG498173.1|EG498173
EST:     TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAG                         CTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT
genomic: TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGgtgattcctt ... ttgtttgtagCTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT
EST: gi|116455583|gb|EG498175.1|EG498175
EST:     TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAG                         CTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT
genomic: TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGgtgattcctt ... ttgtttgtagCTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT
EST: gi|116455580|gb|EG498172.1|EG498172
EST:     TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAG                         CTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT
genomic: TTTTAAGCTGTACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGgtgattcctt ... ttgtttgtagCTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctttaccttgcctgtttccttgcataacaatcctctgttttttttgtttgtagCTATACTCAAGGACTCTCAGTTCAGCGAAGTAGACCGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAG
                       gcataac  putative branch site (score: 3)
                                tcctctgttttttttg  putative PPT
                                       ttttttttgtttgta  TA-rich tract