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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttaaattttctacttttgcatttatatgaaaaataaaatttgcattcatcttgaatctgttgacaattgtgcagAAAATAGGTGAAGATGTGAACTTCGATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G04850.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 14
--------------------------gtaactttta-aattttctacttttgcatttatatgaaaaata-aaatttgcattcatcttgaatctgttgacaattgtgcagAAAATAGGTGAAGATGTGAACTTCGATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAG
                           ||  | |   ||| || | |    |   ||  ||   || |  || ||| |||| |     ||| | ||  ||      |||||      |||    || |||||| ||||||||||| |  |||| ||| ||||||||||||||||||| |||
aaacaaaatagaactgtttcttcacaatatgtgtggcaatcttatgccacagtgatttcattttaacttcaagtttacattgagtactaat-tatttgcag-

upper sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 13
--------gta-acttttaa-attttctacttttgcat-ttatatgaaaaataaaatttgcattcatct-tgaatctgttgacaattg-------tgcagAAAATAGGTGAAGATGTGAACTTCGATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAG---------------------------
         || ||  |||| |||||||  | |   || ||  ||| |  |    |  || |||  ||| || ||    ||| | |||       ||||||||   | |||     | || || |||||||||||| || |||||||  |||||||||||||||||||||||                           
tcttctggatagacaattaacattttcttatatcatatattggatgtattacttcaactgtatttttctgtgcatgaactgaaacttgaattctttgcagAAACCTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatatgaaaaataaaatttgcattcatcttgaatctgttgacaattgtgcagAAAATAGGTGAAGATGTGAACTTCGATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAG
                                      tgttgac  putative branch site (score: 3)
     tatgaaaaataaaatt  TA-rich tract