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gtatgtttataagttcagttccattaagttcttaagttggattggcctagagagaacatggcttattttttgggtgtttccagATGGAATCTGTCATGTATATGTTGATAAGTCTGGTAAACTGGACATGGCAAAGCGCATTGTTTCCGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGC
species | Arabidopsis thaliana |
transcript | AT3G55610.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCTCAAATAAAAAACTCGACGAAAATCCCAGTGCTAGGCCATGCTG ATGGA-TCTGTCATGTATATGTTGATEST: gi|124706769|gb|EH798171.1|EH798171
genomic: TGTTTCTCAAATAAAAAACTCGACGAAAATCCCAGTGCTAGGCCATGCTGgtatgtttat ... gtgtttccagATGGAATCTGTCATGTATATGTTGAT
EST: GACGAAAATCCCAGTGCTAGGCCATGCTG ATGGAATCTGTCATGTATATGTTGATEST: gi|164221709|gb|ES043279.1|ES043279
genomic: GACGAAAATCCCAGTGCTAGGCCATGCTGgtatgtttat ... gtgtttccagATGGAATCTGTCATGTATATGTTGAT
EST: TGTTTCTCAAATAAAAAACTCGACGAAAATCCCAGTGCTAGGCCATGCTG ATGGAATCTGTCAT
genomic: TGTTTCTCAAATAAAAAACTCGACGAAAATCCCAGTGCTAGGCCATGCTGgtatgtttat ... gtgtttccagATGGAATCTGTCAT
ttcttaagttggattggcctagagagaacatggcttattttttgggtgtttccagATGGAATCTGTCATGTATATGTTGATAAGTCTGGTAAACTGGACATGGCAAAGCGCATTGTTTCCGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGC
tgtttcc CT-rich tract
ttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttataagttcagttccattaagttcttaagttggattggcctagagagaacatggcttattttttgggtgtttccagATGGAATCTGTCATGTATATGTTGATAAGTCTGGTAAACTGGACATGGCAAAGCGCATTGTTTCCGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG