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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaattacggttttggttctactcatttcagatctagaaactgagttgatatggttagcagtcagaggttgttcgtttggtttaatttagctagcgctgctatatagagaattttatttcacctgcgactaatccaggctgagcagATATTTCCTTGTAGACGCAGACGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGACCGCACAAATGTTACCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G51830.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51830.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv08s0105g00480.t01 (Vitis vinifera), 3'ss of exon 13
gtaagaattacggttttggttctactcatttcagatctagaaactgagttgatatggttagcagtcagaggttgttc--gtttggtttaatttagctagcgctgctatatagagaattttatttc-acctgcgactaatccaggctgagcagATATTTCCTTGTAGACGCAGACGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGACCGCACAAATGTTACCCAG
                                     || |||   || ||  ||  |    | |   |  ||  |   || ||    |||  || ||  |||| | |||  |  ||| | |||  |    | |||| ||||| ||||||||||| ||| | ||||||||||| |   | ||  | || |||||||||||| |||| ||||||||||||||||| |||||||| || || || || ||||||
------------------------------------gtaaaaaagtagatggaataat--atatttgaacttttattaagtatgccacaatccaggta-tgctgtt-tatccatgattctgtttttaatcactactattccag-ctgagcagATACTTCTTAGTAGACGCAGAAGGAGAGATGTTGGAGGAGCAGAAAGGAATTATTAGATCTAACTGCATCGATTGTCTTGATCGAACGAACGTAACCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcgctgctatatagagaattttatttcacctgcgactaatccaggctgagcagATATTTCCTTGTAGACGCAGACGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGACCGCACAAATGTTACCCAG
                                   gactaat  putative branch site (score: 2)
         tatatagagaatttta  TA-rich tract