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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaacttagtacacatgtttgtgttcttttgaaatatctttgagaggtctcttaatcagaagttgcttgaaacactcatcttgattacagGCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCATCGCAACACTGAAAAAGGCGTATTTTGATGGGGTTTTGTCGAAAGCAGA

Basic information

species Arabidopsis thaliana
transcript AT3G51820.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164022701|gb|ES137949.1|ES137949
EST:     TCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAG                         GCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCA
genomic: TCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGgtaagtcaac ... ttgattacagGCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCA
EST: gi|124893220|gb|EH972122.1|EH972122
EST:     AAATACGACGTCAAGTACCAG                         GCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCA
genomic: AAATACGACGTCAAGTACCAGgtaagtcaac ... ttgattacagGCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttgagaggtctcttaatcagaagttgcttgaaacactcatcttgattacagGCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCATCGCAACACTGAAAAAGGCGTATTTTGATGGGGTTTTGTCGAAAGCAGA
                                       ctcatctt  CT-rich tract
              tcttaat  TA-rich tract