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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagaataaacagaacagtgccttattttcttgaccatgaagttcttacattacgattcacatttattgttgttttcaacaaatctagGGGATGGGTAATACGGAACTACAGTTTGAAATGGCAATGAGGGACCAAATTATTTACAACCAAAGGGAAGCCCAGAGAAACCTATGGAATTTGCTCATGG

Basic information

species Arabidopsis thaliana
transcript AT3G49650.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49650.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv07s0205g00140.t01 (Vitis vinifera), 3'ss of exon 14
---gtaagtagaataaacagaacagtgccttattttcttgaccatgaa-gttcttacattacgattcacatttattgttgttttca-----acaaatctagGGGATGGGTAATACGGAACTACAGTTTGAAATGGCAATGAGGGACCAAATTATTTACAACCAAAGGGAAGCCCAGAGAAACCTATGGAATTTGCTCATGG
        |||   |  |  |   ||   | | ||  ||    | |||   | |||  || | | | |    ||    | ||| ||     | |||| ||||| |||| ||| || || || |||||||||||||||||||| || ||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||||||
agttctcatagggcattccta-tggtctgtaacttcttttgataggaataattttaacttgctactaaagcctaacagtatttccactgtaataaatgtagGGCATGGCTAACACTGAGCTTCAGTTTGAAATGGCAATGAGAGATCAAATTATTCACAACCAACGGGAAGCACAGAGAAACCTGTGGAACTTGCTCATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatgaagttcttacattacgattcacatttattgttgttttcaacaaatctagGGGATGGGTAATACGGAACTACAGTTTGAAATGGCAATGAGGGACCAAATTATTTACAACCAAAGGGAAGCCCAGAGAAACCTATGGAATTTGCTCATGG
         ttcttac  putative branch site (score: 2)
                            atttattgttgtttt  TA-rich tract