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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacagtaacttgcacttcaaggaatcttgagtttcgctttttatttgtaagttttgtagccactgatataattttttgcagGTACATAGAGCTAGAGCTGAGAGAGAGATCCTAGATTTGCTTGACCATCCTTTTCTTCCTGCACTCTACGCTTCTTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G45780.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125145533|gb|EL180730.1|EL180730
EST:     GGACAAGGCTGTTATGCTTAACCGAAACAAA                         GTACATAGAGCTAGAGCTGAGAGAGAGATCCTAGATTTG
genomic: GGACAAGGCTGTTATGCTTAACCGAAACAAAgtaattacag ... ttttttgcagGTACATAGAGCTAGAGCTGAGAGAGAGATCCTAGATTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagtttcgctttttatttgtaagttttgtagccactgatataattttttgcagGTACATAGAGCTAGAGCTGAGAGAGAGATCCTAGATTTGCTTGACCATCCTTTTCTTCCTGCACTCTACGCTTCTTTTCAG
                                  cactgat  putative branch site (score: 3)
                                             ttttttgc  putative PPT
           tttttatttgtaagtt  TA-rich tract