Sequence
atgc intronic sequence ATGC exonic sequencegtgagtattccaaaccctctctttaatcatagaggtctttcttttagttttgtctgttaatcttctagtcagcatctgccgtaatttcctgttcttttggaataacataatagtcttcactcttcagttcttaagcttaaagattgtcattcccctatcgatgttataaatctgatcattgttcaattttcagAGCTCTGCAAATTGCGTTGTTTCCCACCTGTTGCTCTTGCCTGGGATTCTGCTTCTGGACTTCACGTTTTTGCAAATCTATACAGTGAGACAATAGTTAT
Basic information
species | Arabidopsis thaliana |
transcript | AT3G27325.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G27325.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA19G24220.2 (Glycine max), 3'ss of exon 13
gtgagtattccaaaccctctctttaatcatagaggtctttcttttagttttgtctgttaatcttctagtcagcatctgccgtaatttcctgttcttttggaataacataatagtcttcactcttcagttcttaagcttaaagattgtcattcccctatcgatgttataaatctgatcattgttcaattttcagAGCTCTGCAAATTGCGTTGTTTCCCACCTGTTGCTCTTGCCTGGGATTCTGCTTCTGGACTTCACGTTTTTGCAAATCTATACAGTGAGACAATAGTTAT
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-----------------------------------------------------------------------actcatgtt-tcatttctgcatatagttgaatgcattatgaatttgtgattaatattttctg----cagtgtttgatgttttcttttcagc-ttagataact-atagCTGGGTA--TTTCAGGGCTTTGCAAATTGCGCTGTTTCCCACCTGTTGCACTTGCTTGGGATGATACATCTGGTCTTCATGTATATCCAAATTTGAACAGTG-------------
upper sequence: AT3G27325.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA16G06860.1 (Glycine max), 3'ss of exon 12
gtgagtattccaaaccctctctttaatcatagaggtctttcttttagttttgtctgttaatcttctagtcagcatctgc-cgtaatttcctgttcttttggaataacataatagtcttcactcttcagttcttaagcttaaagattgtcattcccctatcgatgttataaatctgatcattgttcaat-tttcagAGCTCTGCAAATTGCGTTGTTTCCCACCTGTTGCTCTTGCCTGGGATTCTGCTTCTGGACTTCACGTTTTTGCAAATCTATACAGTGAGACAATAGTTAT
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--------------------------------------------------------------------------tctgcatatagttgaatgcatt------ataaatttgtggtgaatatttttctgctgt---gtttaatgctttcttttcagctg------------agataactattgctcggtgtttcagGGCTTTGCAAATTGCGCTGTTTCCCACCTGTTGCACTTGCTTGGGATGATACATCTGGTCTTCATGTATATCCAAATTTGAACAGTGAGACAATTGTTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163983774|gb|ES060536.1|ES060536EST: TAAAACTTTTGGTTTACCAGACGGCGAGACAGGAGACTTGGACAAGGATA AGCTCTGCAAATTGCGTTGTTTCCCACCTGTTGCTCTTGCCTGGGATTCTG
genomic: TAAAACTTTTGGTTTACCAGACGGCGAGACAGGAGACTTGGACAAGGATAgtgagtattc ... caattttcagAGCTCTGCAAATTGCGTTGTTTCCCACCTGTTGCTCTTGCCTGGGATTCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagattgtcattcccctatcgatgttataaatctgatcattgttcaattttcagAGCTCTGCAAATTGCGTTGTTTCCCACCTGTTGCTCTTGCCTGGGATTCTGCTTCTGGACTTCACGTTTTTGCAAATCTATACAGTGAGACAATAGTTAT
atctgat putative branch site (score: 4)
ttttc putative PPT
atgttataaat TA-rich tract