1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaaacatacctgtttcttcaactagtgacagtgttttgcttatataaaagcggtttgaaactaaaatgtatgttttgatgtccttgtttacttgctttgaacagTTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAGAGAGTTGTTTGAAAAGGAGCAAGATGACCTTCTTGCTGATTTGAAAGAC
species | Arabidopsis thaliana |
transcript | AT3G20290.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGG TTCCTTCAGTGATAAACCCATAAACGEST: gi|125111734|gb|EL163093.1|EL163093
genomic: TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACCCATAAACG
EST: TGTCTACATTGG TTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAGEST: gi|125073180|gb|EL137609.1|EL137609
genomic: TGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAG
EST: TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGG TTCCTTCAGTGATAAACCEST: gi|164199269|gb|ES135074.1|ES135074
genomic: TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACC
EST: GGTCTCTCGTGTCTACATTGG TTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAG
genomic: GGTCTCTCGTGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAG
gcggtttgaaactaaaatgtatgttttgatgtccttgtttacttgctttgaacagTTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAGAGAGTTGTTTGAAAAGGAGCAAGATGACCTTCTTGCTGATTTGAAAGAC
cttgcttt CT-rich tract
taaaatgtatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatacctgtttcttcaactagtgacagtgttttgcttatataaaagcggtttgaaactaaaatgtatgttttgatgtccttgtttacttgctttgaacagTTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAGAGAGTTGTTTGAAAAGGAGCAAGATGACCTTCTTGCTGATTTGAAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT