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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattcctttactttctgttagacatactccttgcatttagcaaagaacaaacattacatttcttgtttccttgtcaaacagGTGGTTGCGGGTGGAGGTGCAGTTGAATCAGCATTGTCTGTGTATCTGGAGCACCTTGCTACAACCTTGGGCTCTCGCGAACAATTGGCCATCGCTGAAT

Basic information

species Arabidopsis thaliana
transcript AT3G20050.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20050.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 3'ss of exon 13
--------gtaacatt-----cctttactttctgttagacatactccttgcatttagcaaag-aacaaacattacatttc--ttgtttccttgtcaaacagGTGGTTGCGGGTGGAGGTGCAGTTGAATCAGCATTGTCTGTGTATCTGGAGCACCTTGCTACAACCTTGGGCTCTCGCGAACAATTGGCCATCGCTGAAT
          ||  ||       | |||||  | |||| | |     | |  | | |||  | |||     |  |  ||      | |   | |||  ||||| ||||| ||||| |||||||||||| | ||||||||||| ||  ||||| | |||||||||||| | || ||  | ||||| |||||||| |||||||
tccacagaacaatgttggcagtgtatacttcatattagccgtgaatgtagt-tctggcattgtaactttggtggcgctttaaacatgtatgtatcatgcagGTTGTTGCTGGTGGTGGTGCAGTTGAAGCTGCATTGTCTGTATACTTGGAGAATCTTGCTACAACCCTTGGGTCCAGGGAACAGTTGGCCATTGCTGAAT

upper sequence: AT3G20050.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G039263_T01 (Zea mays), 3'ss of exon 13
--------gtaacattcctttacttt---ctgttagacat--actccttgcatttagcaaagaacaaacattac--atttcttgtttccttgtcaaacagGTGGTTGCGGGTGGAGGTGCAGTTGAATCAGCATTGTCTGTGTATCTGGAGCACCTTGCTACAACCTTGGGCTCTCGCGAACAATTGGCCATCGCTGAAT
        | ||  ||| |||| | |     || | |     | |  |||  ||    |  |  | |   |  |  || | || | |  | |  |   |||| ||||| || || |||||||||||| | ||  |||| || ||||||||| ||||||| |||||| |||| ||||| ||||||||||| || |||||||
gtcaaaatgcaattttcttttattataagtggtcaaattctaattgtttgtgttatcgatggtgctagtgtctccaatatgttttgtattggctatgtagGTTGTTGCTGGGGGTGGTGCAGTTGAAGCTGCGCTGTCAGTTTATCTGGAGAACCTTGCAACAACCCTGGGTTCTCGGGAACAATTGGCAATTGCTGAAT

upper sequence: AT3G20050.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G110626_T01 (Zea mays), 3'ss of exon 13
-------gtaacattcctttactttctgttagaca-----tactccttgcatttagcaaaga-acaaacat--tacatttcttgtttccttgtcaaacagGTGGTTGCGGGTGGAGGTGCAGTTGAATCAGCATTGTCTGTGTATCTGGAGCACCTTGCTACAACCTTGGGCTCTCGCGAACAATTGGCCATCGCTGAAT
         ||  | | |||| ||     | ||||     || |   |  |  ||   | || || |   |  |     | || | |  | |  | | |||| ||||| ||||| |||||||||||  | || || || || || || ||| ||||||| || |||||||| ||||| ||||||||||| || |||||||
tgcaatttgaatttgcttttatttatgagtggacaaataataattgctagaactattgatgatactagtgtcttgagcatgttttgtattggcaatatagGTTGTTGCTGGTGGTGGTGCAGTTGAGGCTGCGTTATCAGTTTACCTTGAGAACCTTGCAACGACCTTGGGTTCTCGGGAACAATTGGCAATTGCTGAAT

upper sequence: AT3G20050.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA05G29870.1 (Glycine max), 3'ss of exon 13
------------------------------------------gtaacattcctttacttt----ctgttagacatactccttgcatttagcaaagaacaaacattacatttcttgtttccttgtcaaacagGTGGTTGCGGGTGGAGGTGCAGTTGAATCAGCATTGTCTGTGTATCTGGAGCACCTTGCTACAACCTTGGGCTCTCGCGAACAATTGGCCATCGCTGAAT
                                            ||  || |||||  ||     | | | |     || ||  |||| ||      |      |  |||| ||  |   |    |  |||||||| || ||||||||||| |||||| ||||||| || || ||| ||||| ||||||||||||| || || ||||| || || ||||| || || ||||
gtatcctgcatacgtagctttcatcctactttggttgaaatcaaaatgttgctttagattaagtttttcaaatgatgtctttttattttgccttc--cctgtgcttgattttttaatatataaa-attcagGTGGTAGCTGGTGGAGGTGCTGTTGAAGCAGCATTATCAGTTTATTTGGAGTACCTTGCTACAACTTTAGGATCTCGAGAGCAGTTGGCTATAGCAGAAT

upper sequence: AT3G20050.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv15s0021g02230.t01 (Vitis vinifera), 3'ss of exon 13
-----------------gtaacattcctttactttctgttagacatactccttgcatttagcaaagaacaaacattacatttcttgtttccttgtcaaacagGTGGTTGCGGGTGGAGGTGCAGTTGAATCAGCATTGTCTGTGTATCTGGAGCACCTTGCTACAACCTTGGGCTCTCGCGAACAATTGGCCATCGCTGAAT
                 || | |       | |   |  ||       |   |  || | |  ||||      |  |  ||    || |  |||  | ||||||||| || ||||||||||| |||||  | || || ||||||||| ||||| ||||||| ||||| || || || || || || ||||| || || ||||
tttatgttttgaaagatgtcagaaattaggaataattaatatgagagtttgctaaatattgttaagattgtcaaccaacttgtcagtat--ttgaaatacagGTGGTAGCAGGTGGAGGTGCTGTTGAGGCTGCTTTATCTGTGTATTTGGAGTACCTTGCAACAACTTTAGGATCCCGAGAGCAGTTGGCAATTGCAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccttgcatttagcaaagaacaaacattacatttcttgtttccttgtcaaacagGTGGTTGCGGGTGGAGGTGCAGTTGAATCAGCATTGTCTGTGTATCTGGAGCACCTTGCTACAACCTTGGGCTCTCGCGAACAATTGGCCATCGCTGAAT
                                tttcttgtttccttgt  CT-rich tract
                          attacattt  TA-rich tract