Sequence
atgc intronic sequence ATGC exonic sequencegtgagtagtgtgattcaaagggtttaactatatgtcatctggtttacaatggcttctcttacacttacactttttccatgaatcaccttgtagATATCCCAAATGAGCCTGACTTTCAGGGAAATCATATACAACTACCGGAAGCAACCACAGTGTAAACCATTAGTTTTCCGCAGCGTTTATGTGGATGCGT
Basic information
species | Arabidopsis thaliana |
transcript | AT3G12280.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G12280.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 3'ss of exon 13
gtgagtagtgtgattcaaagggtttaactatatgtcatctggtttacaatggcttctcttacacttacactttttccatgaatcaccttgtagATATCCCAAATGAGCCTGACTTTCAGGGAAATCATATACAACTACCGGAAGCAACCACAGTGTAAACCATTAGTTTTCCGCAGCGTTTATGTGGATGCGT
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-------gtttgctgttagaaacttg--tgagagttattggttgttcaacca-ttttcttttaatccttctttgcccatgtttttgcctgcagATCTCTCAAATGAACCTGACCTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125032052|gb|EL104321.1|EL104321EST: GGAGTGGCCAAG ATATCCCAAATGAGCCTGACTTTCAGGGAAATCATATACAACTACCGGAAG
genomic: GGAGTGGCCAAGgtgagtagtg ... caccttgtagATATCCCAAATGAGCCTGACTTTCAGGGAAATCATATACAACTACCGGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggtttacaatggcttctcttacacttacactttttccatgaatcaccttgtagATATCCCAAATGAGCCTGACTTTCAGGGAAATCATATACAACTACCGGAAGCAACCACAGTGTAAACCATTAGTTTTCCGCAGCGTTTATGTGGATGCGT
cacttac putative branch site (score: 2)
tcacctt putative PPT
ttacaat TA-rich tract