Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaattaagttttaaagtttgccccctccgttgttatgtttaccctaaaggtcattgtgctcaagaggtaccattgttttatgttgtgactctagGTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACGGATCCTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G11130.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 13
--------------------------------------------------------------------gtaaacaattaagttttaaagtttgccccctccgttgt-tatgtttaccctaaaggtcattgtgctcaagaggt----accattgttttatgt---tgtgactctagGTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACGGATCCTCAG
                                                                    ||| |  |||  || |  |  | |        | |||  | | ||   | |  |  | | |||   ||   |||    | |||||| |||  |   |||  || |||||||||||||||||||| ||| | || ||||||||||| || ||||| || |||||||||
gtgcctgtttacttatcaaagaatattgaagcttaatccatagaataattttaatgctattatggcatgtatagcattttgtct--acctgtataattatcattgcatgtattgcactttcattttactgtaaacatttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAG

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 13
------------------------------------------------------gtaaaca-attaagttttaaagtttgcc-ccctccgttgttatgtttaccctaaagg-----tcattgtgctcaagaggt---------accattgttttat---gttgtgactctagGTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACGGATCCTCAG
                                                      |  |  |    | |  |   | |||| | ||||   |  ||||  || |    |  |     ||||| | ||  | | ||         | |||||| |||     ||||  || |||||||||||||||||||| ||| | || ||||||||||| || ||||| || ||||| |||
gtgcctgcttacttatcaaagaatattgaagtttaatccatagaataatttagtgctattatggcatgcatagcattttgtcaccctgtataattataattgcatgtattgccctttcattttactgtaaacgtttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164184287|gb|ES118110.1|ES118110
EST:     ATTGATTTATTCAAAGCAG                         GTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACG
genomic: ATTGATTTATTCAAAGCAGgtaaacaatt ... gtgactctagGTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccctaaaggtcattgtgctcaagaggtaccattgttttatgttgtgactctagGTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACGGATCCTCAG
  ccctaaa  putative branch site (score: 3)
                                attgttttat  TA-rich tract