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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctaccttgactcacatcaccggccaactgcttaaccaatttctgtcctcgtgataagatgaatatacgtctgtttgtagaaaaccttctattatcatcagggtgaaaaagattatttgttatatcatgactcttcgtatgtcattgcgcagTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G10550.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: LOC_Os08g44260.1 (Oryza sativa), 3'ss of exon 13
gttagctaccttgactcacatcaccggccaactgcttaaccaatttctgtcctcgtg-ataagatgaatatacgtctgtttgtagaaaaccttctattatcatcagggtgaaaaagattatttgttatatcatgactcttcgtatgtcattgcgcagTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG
                                          |||||  || | ||   || |||   |||| || |  |||  |   | |       ||       |   |  | ||| | |     |  ||     || ||      ||  |||||||||| |||||| | ||||||||| | ||| | ||||| || || |||||||||||||| || ||||| ||   |||||| |||
----------------------------------------tgatttc-atcttagtctgtatgatctctata-gttttcttgctgtgtatccctacacattgctgatgcatatcaaattctct----cactat-----tttgt------ttttgcagTGATGGTTGGGACCGCACAACTCAGTTGGTTGCACTTGCTTGTTTGTTGCTTGATCCATATTATAGAACGTTCAATGGGTTCCAG

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G046050_T01 (Zea mays), 3'ss of exon 1
gttagctaccttgactcacatcaccggccaactgcttaaccaatttctgtcctcgtgataagatgaatatacgtctgtttgtagaaaaccttctattatcatcagggtgaaaaagattatttgttatatcatgactcttcgtatgtcattgcgcagTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG
                                            | || |    || ||  || ||   |  ||   | | || |   | || |    |  ||   ||          || ||    || ||   ||  | | | |  ||  ||||||||||||||||| | ||||| ||| | ||||| ||||| || |||||||||||||| || ||  |||||||   ||| || |||
-------------------------------------------atcctttgggtgtcatctgaggatcctgtgtg-atctctatag--ctttgtcgctttgtctttgtag-------catctga---atgatttttccccttctttgtttctgcagTGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAG

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G449163_T01 (Zea mays), 3'ss of exon 5
gttagctaccttgactcacatcaccggccaactgcttaaccaatttctgtcctcgtgataagatgaatatacgtctgtttgtagaaaaccttctattatcatcagggtgaaaaagat-tatttgttatatcatgactcttcgtatgtcattgcgcagTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG
                                                        ||| | || |   |     |||     ||  | | | | | |||   |  |         | ||     |  || ||   | | | | | |  ||  ||||||||||||||||| | ||||| ||| | ||||| ||||| || |||||||||||||| || ||  |||||||   ||| || |||
--------------------------------------------------------gatga-ataatcctttaggtgtcatctgaggatcctgtgtgatctctatagctttgtctttgtagcatctgaatgatttttttccttctctgtttctgcagTGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagggtgaaaaagattatttgttatatcatgactcttcgtatgtcattgcgcagTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG
        aaaaagattatttgtt  TA-rich tract