1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaatagtattttctaaccaatcgggttttaacaagttttggtttgattgcagtctaagcagttcagcttggtttatatgaccatcaacttgtgtggctggtcatggcattgttttataacaaagaaactgagcatctaagtgtgagcagGTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGATGAAGGACGAGGATGGTGTGGCTGGAGCCGTGAAGGCCTTCTTTAAACATCTTCCAAGTGCAAAAC
species | Arabidopsis thaliana |
transcript | AT3G07020.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCTCACTTCATAAGCTTGAAGATGCCATAAATTTCATGCTCGACGATAAG GTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGATGAAGGACGGGGATGGTEST: gi|125231808|gb|EL245893.1|EL245893
genomic: TCTCACTTCATAAGCTTGAAGATGCCATAAATTTCATGCTCGACGATAAGgtaaatagta ... gtgtgagcagGTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGATGAAGGACGAGGATGGT
EST: TCTCACTTCATAAGCTTGAAGATGCCATAAATTTCATGCTCGACGATAAG GTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGA
genomic: TCTCACTTCATAAGCTTGAAGATGCCATAAATTTCATGCTCGACGATAAGgtaaatagta ... gtgtgagcagGTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGA
ggctggtcatggcattgttttataacaaagaaactgagcatctaagtgtgagcagGTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGATGAAGGACGAGGATGGTGTGGCTGGAGCCGTGAAGGCCTTCTTTAAACATCTTCCAAGTGCAAAAC
ttataac putative branch site (score: 2)
attgttttataacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatagtattttctaaccaatcgggttttaacaagttttggtttgattgcagtctaagcagttcagcttggtttatatgaccatcaacttgtgtggctggtcatggcattgttttataacaaagaaactgagcatctaagtgtgagcagGTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGATGAAGGACGAGGATGGTGTGGCTGGAGCCGTGAAGGCCTTCTTTAAACATCTTCCAAGTGCAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA