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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatctatcccaaatctaaaacaaaatttggttgaatcccttaagaaaattgcgtgagaagagaattatattactttgtgtgtattacagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT

Basic information

species Arabidopsis thaliana
transcript AT2G33210.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 3'ss of exon 14
------------------------------gtataatctatcccaaatctaaaacaaaatttggttgaatcccttaagaaaattgcgtgagaagagaattatatta---ctttgtgt-gtattacagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT
                               |  ||| | |      | |||   |    ||   |      |||   |  |||  |    |  |   | | || |   |||||  |   | ||||||||| |||||||| ||| | ||||| || || || || || ||  |  | || |||||||||||||| || |||||||| ||||||||||| || ||  |
gtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTT

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G111477_T01 (Zea mays), 3'ss of exon 2
------------------gtataatctatcccaaat-ctaaaacaaaatttggttgaat--cccttaagaaaattgcgtgagaagagaat------tatattactttgtgtgtat-tacagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT
                   | | || |   |   ||  | |  |  | ||   |||  |    | ||   |  |   ||   |  || ||      ||     ||||   ||||| | |||||||||||||||||||| | ||||| ||||| || ||||| ||  |    ||||| ||||| |||||||| |||||||| ||||||||||| || ||  |
gtaatgtatcatttgaatatttgatgttcacgggatgttcatgctgatttcctttgtgttattcctactgatctcctgttgcatcagtatgcctgatagtcatctttaattgtatatgcagGTGGTGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTTGATAAATTGCAGACAGCGAACTTCGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTT

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G416120_T01 (Zea mays), 3'ss of exon 13
----------------------------------------------------gtataatctatcccaaat--------ctaaaacaaaatttggttgaatcccttaagaaa----attgcgtgagaa-----gagaattatattactttgtgtgtattacagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT
                                                    || | || |   || | |         |  | ||  |||||  | | |   |   ||       |||||| || |     | || | | ||   |   |||||||  |||||||||||||||||||| | ||||| ||||| || || || ||| |    ||||| || ||||||||||| |||||||| ||||||||||| || ||  |
gtaatgtatcaattaaaatttcatggggggggggtgtttatgctgatttcctgtgttatttgctcctactgattcctgttgcatcagtatttgtgttagttattcctgatttcctgttgcgtcagtatgcccgggagtca-atctttaattgtgtat-gcagGTGGTGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTCGATAAGTTGCAGACAGCAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTT

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: PP1S149_289V6.1 (Physcomitrella patens), 3'ss of exon 13
-------gtata-atctatcccaaatctaaaacaaaatttggttgaatcccttaagaaaattgcgtgagaagagaattatattactttgtgtgtattacagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT
        ||||  |  ||   | |    |    |    | |   |  ||||   |    | |  ||  ||   | ||  | |  |   || ||   |||||||||||||| |||||||||||||||||   ||| || |||||  ||   || || |||||||| ||||| || || || |||||||| ||||| ||  |
taaatttatatacgtagattttagaaggcacgtcatgaattgcgaagcccctctggtgtttcgtctggtaatgaattttcaat-ttgattgggtggaacagGTGGTGGTGTGGCTCTTTTGTATGCTTCTCGAGAGCTGGAGAAAGTTCAAACTGCGAACTTTGACCAGAAGATCGGAGTGCAAATCATCCAAAATGCTTT

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: PP1S52_245V6.1 (Physcomitrella patens), 3'ss of exon 14
---------gtataatctatcccaaatctaaaacaaaatttggttgaatcccttaagaaaattgcgtgagaagagaattatattactttgtgtgtattacagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT
         || ||| ||    |   | |  |  |  || |  ||  ||    |  ||  |   |   | ||  ||    | || |   |  |  | | ||||||||||||||||||| |||||||||||    || ||||| ||| ||   || || ||||||||||||||  |||| || |||||||| || || ||  |
tgctgagttgtttaaacttgtacctgttttgaggaccatgtcatttgatttactgggatcacatca-aataatggatgagtgtttcacgggattgaat-cagGTGGTGGTGTTGCTCTATTGTATGCTTCCCGGGAGCTTGATAAGATTCAAACCGCGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTT

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: PP1S378_9V6.2 (Physcomitrella patens), 3'ss of exon 13
----gtataatctatcccaa-atctaaaacaaaatttggttgaatcccttaagaaaattgcgtgagaagagaattatattactttgtgtgtatta--cagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT
     | ||   | |   |   | || |     |  ||  |   |   |  ||  |  |   |   ||   |    ||  |     | || ||    |||||||||||||||||||||||||||||||    || ||||| ||  ||   ||  | ||||| || |||||  |||| || ||||| ||||| || ||  |
tgggatctagcttgttgaattgtttacacttgcaaatgtgttgttttttagagccatctatttagtaattaatgcgtaacatgaaatttgaatggatcagGTGGTGGTGTTGCTCTTTTGTATGCTTCACGGGAGCTTGACAATGTTCAAACTTCAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcccttaagaaaattgcgtgagaagagaattatattactttgtgtgtattacagGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACT
                          agaattatattacttt  TA-rich tract