Sequence
atgc intronic sequence ATGC exonic sequencegtaataatcttcatgacctttgtttaagtatcatcaatccgtgattacactgtgcttctggtaatctagtgtgtatgtgcaaatgatgcagGAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCTGAGCATGATGTGAGTGAAACTCTAAGTTCACTTAACTTTGCAACTCGTGTAAGAGG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G22610.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G22610.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA09G33340.1 (Glycine max), 3'ss of exon 11
----------------------------------------gtaataatcttcatgacctttgtttaagtatcatcaatccgtgattacactgtgcttctggtaatctagtgtgtatgtgcaaatgatgcagGAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCTGAGCATGATGTGAGTGAAACTCTAAGTTCACTTAACTTTGCAACTCGTGTAAGAGG
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gtatgtctagtcacttcagctttttatgtgtttttgaggagtaagatcctgtttctgcaacatatatatat-atatatatatatatatatattggtaacattccttgcttattttttgtaaaacattgcagGAGGTGACTCCAAAACTTTGATGTTTGTACAAATAAGTCCATCAGACCAGGACGTAGGTGAGACACTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGG
upper sequence: AT2G22610.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA01G02620.1 (Glycine max), 3'ss of exon 14
-------------gtaataatcttcatg-acctttgtttaagtatcatcaatccgtgattacactgtgcttc--tggtaatctagtgtgtatgtgc------aaatgatgcagGAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCTGAGCATGATGTGAGTGAAACTCTAAGTTCACTTAACTTTGCAACTCGTGTAAGAGG
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gtatgtctagtcacttcagctttttgtgtgtttgtgtttttgaggagtaagatcctgattatgcaagaatatattggtaacattccttgcttatttttcgtaaaacattgcagGAGGTGACTCCAAAACTTTGATGTTTGTACAAATAAGTCCATCAGACCAGGACGTAGGTGAGACACTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGG
upper sequence: AT2G22610.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv18s0001g07800.t01 (Vitis vinifera), 3'ss of exon 11
---gtaat-aatcttcatgacctttgttta-agtatcatcaatccgtgattacactgtgcttctggtaatctagt----gtgtatgtgcaaatgatgcagGAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCTGAGCATGATGTGAGTGAAACTCTAAGTTCACTTAACTTTGCAACTCGTGTAAGAGG
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gctttacttggtctttagatcttataattgcaagatcagagactgatgaatataatttggttatatttgattggtcaaagaatccatccacttgctgcagGGGGTGATTCAAAAACTTTGATGTTTGTGCAAATCAGTCCTTCAGAACAGGACTTGGGTGAAACTCTAAGTTCATTAAACTTTGCAACTCGAGTTCGAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164236194|gb|EL975542.1|EL975542EST: TTCAAGATTCACTAG GAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCT
genomic: TTCAAGATTCACTAGgtaataatct ... aatgatgcagGAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atccgtgattacactgtgcttctggtaatctagtgtgtatgtgcaaatgatgcagGAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCTGAGCATGATGTGAGTGAAACTCTAAGTTCACTTAACTTTGCAACTCGTGTAAGAGG
taatcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataatcttcatgacctttgtttaagtatcatcaatccgtgattacactgtgcttctggtaatctagtgtgtatgtgcaaatgatgcagGAGGTGATTCAAAGACATTGATGTTTGTGCAAATCAGTCCATCTGAGCATGATGTGAGTGAAACTCTAAGTTCACTTAACTTTGCAACTCGTGTAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG