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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgctgtcgtgtttgattttgctgggaccatttgtgctaatatttgcagccactcttccatcttactcagccttatttctcagGCATTGGCACTTCTTGGAGACTATATAGACAAAGAGGATTCATCTGTCAGAATCGGTGCTATCATGGGTCTTGGAATTTCATACGCAGGTTCCCAAAATG

Basic information

species Arabidopsis thaliana
transcript AT2G20580.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116456407|gb|EG498999.1|EG498999
EST:     TGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCT                         GCATTGGCACTTCTTGGAGACTATATAGACAAAGAGGATTCATCTGTCAGA
genomic: TGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCTgtgagttgct ... tatttctcagGCATTGGCACTTCTTGGAGACTATATAGACAAAGAGGATTCATCTGTCAGA
EST: gi|163993478|gb|ES184572.1|ES184572
EST:     TGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCT                         GCATTGGCACTTCTTGGAGACTA
genomic: TGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCTgtgagttgct ... tatttctcagGCATTGGCACTTCTTGGAGACTA
EST: gi|164221660|gb|ES133838.1|ES133838
EST:     TGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCT                         GCATTGGCACTTCTTGG
genomic: TGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCTgtgagttgct ... tatttctcagGCATTGGCACTTCTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgtgctaatatttgcagccactcttccatcttactcagccttatttctcagGCATTGGCACTTCTTGGAGACTATATAGACAAAGAGGATTCATCTGTCAGAATCGGTGCTATCATGGGTCTTGGAATTTCATACGCAGGTTCCCAAAATG
                                          ccttatttctc  CT-rich tract
         taatattt  TA-rich tract