Sequence
atgc intronic sequence ATGC exonic sequencegtaattaagcataaccatcctctgttataaactcatctttagctttcgacaatattgctttgtgtataaaaagctctctggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G19940.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA07G29630.1 (Glycine max), 3'ss of exon 13
gta-attaagcataaccatcctctgttata---aactcatctttagctttcgacaatattgc------tttgtgtataaaaagctctc----tggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT
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gtatgttaagtttttttttcctcctatatatccagctgaaattgtgtatttaatgatattatgatactattgttgacatcactatgttgatgtgttgttgcagATTGATAATCTAGTGAAGGGAGCTTCAGGTCAAGCTTTACAAAACCTTAATTTGTTAATGGGATTTCCAGAAAATTTGGGACTTCATTACCTGCCTCTTT
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv03s0063g01110.t01 (Vitis vinifera), 3'ss of exon 12
-------gtaattaagcataaccatcctctgttataaactcatcttt-----------agctttcgacaatattgctttgtgtataaaaagctct---ctggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT
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gtatgtttaaatttcctttgttcatgttttagaattccttcatatttctagtatgaaaggttattaataatcctactatcactggctaaggtctcaaatccttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAATGTGATGATGGGATTGCCGGAGAATACAGGACTTCTCTACCAGCCATTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86085468|gb|DR381227.1|DR381227EST: TGAGTGTCTTTCCTGATCGAATTCCTGGAAGAGCTATCATAATCTCAGT
genomic: TGAGTGTCTTTCCTGATCGAATTCCTGGAAGAGCTATCATAATCTCAGT
EST:
gi|124826986|gb|EH911852.1|EH911852EST: GAAGAGCTATCATAATCTCAGT
genomic: GAAGAGCTATCATAATCTCAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctttagctttcgacaatattgctttgtgtataaaaagctctctggtgttgcagATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTT
ctctctg CT-rich tract
tttgtgtataaaaa TA-rich tract