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gtaatttgtcttctttctttgccataaaatgtgttttgcggttatttgtgattcttttttggatagatgtaataggtacttgtgttttgaataacagCTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTTTTGCGAGTGGAAGCCCATTCAAGAATGTGGAATTTG
species | Arabidopsis thaliana |
transcript | AT2G13560.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TATTTGCAATGTCAAACCCCACAAAAAATG CTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGEST: gi|164156928|gb|ES084632.1|ES084632
genomic: TATTTGCAATGTCAAACCCCACAAAAAATGgtaatttgtc ... tgaataacagCTGAATGCACGCCTCAAGATGCATTTTCGATATTAGG
EST: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATG CTGAATGCACGCCEST: gi|125012848|gb|EL085117.1|EL085117
genomic: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATGgtaatttgtc ... tgaataacagCTGAATGCACGCC
EST: AAGGCCTGCTATATTTGCAATGTCTAAACCCCAC-AAAAATG CTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTTEST: gi|116453720|gb|EG496312.1|EG496312
genomic: AAGGCCTGCTATATTTGCAATGTC-AAACCCCACAAAAAATGgtaatttgtc ... tgaataacagCTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTT
EST: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATG CTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTTEST: gi|125225525|gb|EL239610.1|EL239610
genomic: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATGgtaatttgtc ... tgaataacagCTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTT
EST: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATG CTGAATGCACGCCTCAAGATGCATTTEST: gi|47828604|gb|CK118288.1|CK118288
genomic: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATGgtaatttgtc ... tgaataacagCTGAATGCACGCCTCAAGATGCATTT
EST: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATG CTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTT
genomic: AACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATGgtaatttgtc ... tgaataacagCTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTT
tatttgtgattcttttttggatagatgtaataggtacttgtgttttgaataacagCTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTTTTGCGAGTGGAAGCCCATTCAAGAATGTGGAATTTG
attctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgtcttctttctttgccataaaatgtgttttgcggttatttgtgattcttttttggatagatgtaataggtacttgtgttttgaataacagCTGAATGCACGCCTCAAGATGCATTTTCGATATTAGGCGAAAATATGATTTTTGCGAGTGGAAGCCCATTCAAGAATGTGGAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG