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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtggatatattcattacacttatttatggactgtcactgtcagtgttgctctttttcaagtgctcatgttttctctattttttacttctccagGATAAATCTTCTACATCAAACTTGAAAATTGAAGCTCTTGTCTTCACCAAATTAGTCTTGGCATCACATGCGCCTCCTGTTTTTCACCCTTACATTAAG

Basic information

species Arabidopsis thaliana
transcript AT2G02560.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 14
gt-tagtggatatattcattacacttatt----tatggactgtcac-tgtcagtgt-tgctctttttcaagtgctcatgttttctctattttttacttctccagGATAAATCTTCTACATCAAACTTGAAAATTGAAGCTCTTGTCTTCACCAAATTAGTCTTGGCATCACATGCGCCTCCTGTTTTTCACCCTTACATTAAG
||  | |  || |  ||     | |||||    ||||||||   |  | | | | | || |  |      ||| |  | | |||| | |   ||   |   ||||||||||| |||||||| |||||||| ||||| |||||| | ||||| | |||||| ||||| || ||| | ||| ||||||| || |||||||| |||
gtacattaaatcttctctaattaattattgtattatggacttgtatattttactatgtgatgctgacattgtggttttttcttctttctccattttcttaacagGATAAATCCTCTACATCCAACTTGAAGATTGAGGCTCTTATATTCACAAGATTAGTGTTGGCTTCTCATTCACCTTCTGTTTTCCATCCTTACATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164229599|gb|ES134854.1|ES134854
EST:     GGAATTGAAAGGGCGCTAAAT                         GATAAATCTTCTACATCAAACTTGAAAATTGAAGCTCTTGTCTTCACCAAA
genomic: GGAATTGAAAGGGCGCTAAATgttagtggat ... acttctccagGATAAATCTTCTACATCAAACTTGAAAATTGAAGCTCTTGTCTTCACCAAA
EST: gi|164083216|gb|ES173012.1|ES173012
EST:     GGAATTGAAAGGGCGCTAAAT                         GATAAATCTTCTACATCAAACTTGTAAAAATTGAAGCTCTTGTCTTCACCA
genomic: GGAATTGAAAGGGCGCTAAATgttagtggat ... acttctccagGATAAATCTTCTACATCAAACTTG--AAAATTGAAGCTCTTGTCTTCACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagtgttgctctttttcaagtgctcatgttttctctattttttacttctccagGATAAATCTTCTACATCAAACTTGAAAATTGAAGCTCTTGTCTTCACCAAATTAGTCTTGGCATCACATGCGCCTCCTGTTTTTCACCCTTACATTAAG
                        ctcatgttttctctat  CT-rich tract
                              ttttctctatttttta  TA-rich tract