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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcataaactattcaatgtttatgcattttcacaggaagaaactgaatttaaagcactaaattagttcggtgattaatccaagtgcaattgcagcctctgatgaaattattgagagctctctgatcatacctgcctgatgtttctgctaacgtgtttggtgccatgtttgttgcagAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAACTATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACTAGACCGTCTTCG

Basic information

species Arabidopsis thaliana
transcript AT1G73950.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125163327|gb|EL190097.1|EL190097
EST:     AGAGAAATCAGTGTTGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAG                         AAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAA
genomic: AGAGAAATCAGTGTTGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGgtatcataaa ... tttgttgcagAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAA
EST: gi|164137130|gb|ES112333.1|ES112333
EST:     AGAGAAATCAGTGTTGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAG                         AAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAACTATCG
genomic: AGAGAAATCAGTGTTGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGgtatcataaa ... tttgttgcagAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAACTATCG
EST: gi|125226495|gb|EL240580.1|EL240580
EST:     AGAGAAATCAGTGTTGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAG                         AAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAACTATCG
genomic: AGAGAAATCAGTGTTGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGgtatcataaa ... tttgttgcagAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAACTATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcatacctgcctgatgtttctgctaacgtgtttggtgccatgtttgttgcagAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAACTATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACTAGACCGTCTTCG
                       tgctaac  putative branch site (score: 1)