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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggttctgttatttgcttcttcttttttccgtgttaaattctttataagggaagaaaattagtatgtgttattgataagcgtgtgtcctacagAACTCTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATGCCCGTAAGCAGAACCACTTCATGGCATTACACTCGTAAGTCTCTTCCGT

Basic information

species Arabidopsis thaliana
transcript AT1G57870.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124830688|gb|EH915134.1|EH915134
EST:     TCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCACAAG                         AACTCTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATG
genomic: TCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCACAAGgtaaggttct ... tgtcctacagAACTCTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATG
EST: gi|116422944|gb|EG465536.1|EG465536
EST:     TCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCACAAG                         AACTTTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATG
genomic: TCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAAACCACAAGgtaaggttct ... tgtcctacagAACTCTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttataagggaagaaaattagtatgtgttattgataagcgtgtgtcctacagAACTCTCTGGTATCCCTCCTGAAACTGTGGACCGACTTGTCCCAGAACATGCCCGTAAGCAGAACCACTTCATGGCATTACACTCGTAAGTCTCTTCCGT
                               tattgat  putative branch site (score: 3)
             aagaaaattagtat  TA-rich tract