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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaacaaaccaaaacctttttgcaacttataagtttaacaaaccaaaacctttttccaacttatctgcatagcctaaacagtcaaaatgaatgtatggttacgtatggtatagGCACCTGAAGGAGTAAATGTGGTGTGCAAAAAGTTCCCAAGGATAAAGATTGTGACTTCAGAGATAGAACTCGGTTTAAACGACGAGTTCCGAGTTGTTC

Basic information

species Arabidopsis thaliana
transcript AT1G55810.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074649|gb|DR370406.1|DR370406
EST:     TAAGTAAAGGCGTGCCTGAATCCAACATCATATTTCTCAATTTGATATCT                         GCACCTCAAGGAGTAAATGTGGTGTGCAAAAAGTTCCCAAGGATAAAGATT
genomic: TAAGTAAAGGCGTGCCTGAATCCAACATCATATTTCTCAATTTGATATCTgtaagtttaa ... tatggtatagGCACCTGAAGGAGTAAATGTGGTGTGCAAAAAGTTCCCAAGGATAAAGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttatctgcatagcctaaacagtcaaaatgaatgtatggttacgtatggtatagGCACCTGAAGGAGTAAATGTGGTGTGCAAAAAGTTCCCAAGGATAAAGATTGTGACTTCAGAGATAGAACTCGGTTTAAACGACGAGTTCCGAGTTGTTC
             gcctaaa  putative branch site (score: 3)
 aaaatgaat  TA-rich tract