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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttattgctattaatagtcattactcttgaaaactctttaccttctctctattgtaagactgaattttggaatcaatgttaaaacagTACCCACAACCGATGATGGTTACTCAGCAGAGACCAATCTTGTTCATGCCGCCAACGCCATACCAACCG

Basic information

species Arabidopsis thaliana
transcript AT1G54170.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164055435|gb|ES179880.1|ES179880
EST:     CAACACAGCTTAGTCCGAATCAAACATATTATTCTCCAAATAGTCCACAG                         TACCCACAACCGATGATGGTTACTCAGCAGAGACCAATCTTGTTCATGCC
genomic: CAACACAGCTTAGTCCGAATCAAACATATTATTCTCCAAATAGTCCACAGgtttgtttat ... gttaaaacagTACCCACAACCGATGATGGTTACTCAGCAGAGACCAATCTTGTTCATGCC
EST: gi|163980212|gb|EL969432.1|EL969432
EST:     CAACACAGCTTAGTCCGAATCAAACATATTATTCTCCAAATAGTCCACAG                         TACCCACAACCGA
genomic: CAACACAGCTTAGTCCGAATCAAACATATTATTCTCCAAATAGTCCACAGgtttgtttat ... gttaaaacagTACCCACAACCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctttaccttctctctattgtaagactgaattttggaatcaatgttaaaacagTACCCACAACCGATGATGGTTACTCAGCAGAGACCAATCTTGTTCATGCCGCCAACGCCATACCAACCG
                                      aatcaatgttaaaa  TA-rich tract