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gttagttccagtctctaataaactttacctctctcacatctctctagcatttacaacaattcacatgttttacagGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG
species | Arabidopsis thaliana |
transcript | AT1G51710.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAGGAGTGCAGACTCTAGTCATTATGTTGCATGGGTCAAGCAAGAGAGTG GCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGEST: gi|164212108|gb|ES059670.1|ES059670
genomic: CAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAGCAAGAGAGTGgttagttcca ... tgttttacagGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAG
EST: ATGGGTCAAGCAAGAGAGTT GCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGEST: gi|86084161|gb|DR379920.1|DR379920
genomic: ATGGGTCAAGCAAGAGAGTGgttagttcca ... tgttttacagGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAG
EST: CAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAGCAAGAGAGTG GCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAG
genomic: CAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAGCAAGAGAGTGgttagttcca ... tgttttacagGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAG
aactttacctctctcacatctctctagcatttacaacaattcacatgttttacagGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG
ctctcac putative branch site (score: 3)
atttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttccagtctctaataaactttacctctctcacatctctctagcatttacaacaattcacatgttttacagGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG