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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttctatgggagatttttctgttatcttaaatatctgttttctcaagttctggcaggaactcataatatgctctatgcagGGAAAAATCTGTCAATGCTTCCTGTGGAGCCTAAACTTGGAAAAATGCTTATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGC

Basic information

species Arabidopsis thaliana
transcript AT1G48650.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48650.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA08G05480.1 (Glycine max), 3'ss of exon 13
------------------------------------------------------gtgtgtttctatgggagatttttctgttatcttaaatatctgttttctcaagttctggcagga-----actcataat---atgctc-tatgcagGGAAAAATCTGTCAATGCTTCCTGTGGAGCCTAAACTTGGAAAAATGCTTATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGC
                                                      |  | |    ||    | ||||||       ||| | |  | || | |  | || |  |||        || ||| |   |||||  | | ||||| | ||  || ||||||||||||||||||| |||||||| || ||||| ||||| || || |||||||| ||| | |||||  ||||||||||||||||
gtaaaacaactactgcatcatgttctctatttctcttgccattttttatgaaaagaatttgctcatcattggtttttccaagcctttata-acgtattattttgatttgttccagagctactgctgatattgaaatgctaattttcagGGCACAAATTGGCAATGCTTCCTGTGGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCAATCTTCAAGTGTTTGGATCCCATAATGACAGTTGTTGC

upper sequence: AT1G48650.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA05G34180.1 (Glycine max), 3'ss of exon 13
--------------------------------------------------------gtgtgtttctatgggagatttttctgttatcttaaatatctgttttctcaagttctggcagga-----actcataat---atgctc-tatgcagGGAAAAATCTGTCAATGCTTCCTGTGGAGCCTAAACTTGGAAAAATGCTTATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGC
                                                         | |  |  | |    | ||||||       ||| | || | || | |  | || |  |||        || ||| |   ||| |  | | ||||| | ||  || ||||||||||||||||||| |||||||| || ||||| ||||| || ||||||||||| ||| | |||||  |||||||  |||||||
gtaaaacaactactgcatcatggtctctatttctcttgccattttttatgaaaacaattttctcttgtcattggtttttccaagcctttata-atgtattattttgatttgttccagagctactgctgatattgaaatgttaattttcagGGCACAAATTGGCAATGCTTCCTGTGGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCTATCTTCAAGTGTTTGGATCCCATAATGACTATTGTTGC

upper sequence: AT1G48650.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 12
-----------------------------------------gtgtgtttctatgggagatttttctgttatcttaaatatctgttt------tctcaagttctggcaggaactcataatatgctctatg-----cagGGAAAAATCTGTCAATGCTTCCTGTGGAGCCTAAACTTGGAAAAATGCTTATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGC
                                          |   | | | |  |   ||||   ||| |  ||    | | |||      | |  |      | | || ||||     ||||   ||     ||||    ||  ||||||||||||| || ||||| |||||||| |||||||| || || ||  || | |||||||||||  ||||| ||||||| ||||||||
gtgcataaattatatttctttgtctattttggtgttcatattttgatctttctaagctgttttaaggttgtgctattggtatatttaaaatatttagaaaagaagaaagacctcaagtcttgctggttgtttgacagGACGCAACTTGTCAATGCTTCCGGTTGAGCCCAAACTTGGGAAAATGCTCATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaatatctgttttctcaagttctggcaggaactcataatatgctctatgcagGGAAAAATCTGTCAATGCTTCCTGTGGAGCCTAAACTTGGAAAAATGCTTATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGC
                                   tcataatat  TA-rich tract